MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Providencia alcalifaciens
WMus003.1
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 66
bases: 3,919,227 bps
CDS: 3,576
rRNA: 12
Repeat region:
tmRNA: 1
tRNA: 80
misc RNA:
Total features: 3,669
Total number of protein coding genes annotated/found:
3,576
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Items 1 - 20
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Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5002|JADGLZ010000010.1
SEQF5002_00001
Genome Viewer
NA
AA
126/42
66-191
hypothetical protein
SEQF5002|JADGLZ010000010.1
SEQF5002_00002
Genome Viewer
NA
AA
930/310
794-1723
Homoserine O-succinyltransferase
SEQF5002|JADGLZ010000010.1
SEQF5002_00003
Genome Viewer
NA
AA
1599/533
2090-3688
Malate synthase A
SEQF5002|JADGLZ010000010.1
SEQF5002_00004
Genome Viewer
NA
AA
1308/436
3757-5064
Isocitrate lyase
SEQF5002|JADGLZ010000010.1
SEQF5002_00005
Genome Viewer
NA
AA
1743/581
5170-6912
Isocitrate dehydrogenase kinase/phosphatase
SEQF5002|JADGLZ010000010.1
SEQF5002_00006
Genome Viewer
NA
AA
639/213
7595-6957
KHG/KDPG aldolase
SEQF5002|JADGLZ010000010.1
SEQF5002_00007
Genome Viewer
NA
AA
1851/617
9471-7621
Phosphogluconate dehydratase
SEQF5002|JADGLZ010000010.1
SEQF5002_00008
Genome Viewer
NA
AA
795/265
9706-10500
hypothetical protein
SEQF5002|JADGLZ010000010.1
SEQF5002_00009
Genome Viewer
NA
AA
279/93
10918-11196
hypothetical protein
SEQF5002|JADGLZ010000010.1
SEQF5002_00010
Genome Viewer
NA
AA
888/296
11523-12410
N-acetylmuramoyl-L-alanine amidase AmiD
SEQF5002|JADGLZ010000010.1
SEQF5002_00011
Genome Viewer
NA
AA
831/277
13277-12447
Transcriptional repressor IclR
SEQF5002|JADGLZ010000010.1
SEQF5002_00012
Genome Viewer
NA
AA
3684/1228
13534-17217
Methionine synthase
SEQF5002|JADGLZ010000010.1
SEQF5002_00013
Genome Viewer
NA
AA
588/196
17272-17859
hypothetical protein
SEQF5002|JADGLZ010000010.1
SEQF5002_00014
Genome Viewer
NA
AA
1560/520
18054-19613
Secretory immunoglobulin A-binding protein EsiB
SEQF5002|JADGLZ010000010.1
SEQF5002_00015
Genome Viewer
NA
AA
246/82
19968-20213
hypothetical protein
SEQF5002|JADGLZ010000010.1
SEQF5002_00016
Genome Viewer
NA
AA
1368/456
21665-20298
Lysine-sensitive aspartokinase 3
SEQF5002|JADGLZ010000010.1
SEQF5002_00017
Genome Viewer
NA
AA
1647/549
22026-23672
Glucose-6-phosphate isomerase
SEQF5002|JADGLZ010000010.1
SEQF5002_00018
Genome Viewer
NA
AA
504/168
23963-24466
Chorismate pyruvate-lyase
SEQF5002|JADGLZ010000010.1
SEQF5002_00019
Genome Viewer
NA
AA
855/285
24541-25395
4-hydroxybenzoate octaprenyltransferase
SEQF5002|JADGLZ010000010.1
SEQF5002_00020
Genome Viewer
NA
AA
2505/835
27976-25472
Glycerol-3-phosphate acyltransferase
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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